Converting Sciex OS WIFF2 Files to the MzML and MzXML Format


日付: 12/22/2017
カテゴリー: Analyst software

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For research use only. Not for use in diagnostic procedures.


Answer

The Proteowizard tool (http://proteowizard.sourceforge.net/downloads.shtml) for MzML and MzXML conversion has been updated to work with the new WIFF2 files that are produced by SCIEX OS 1.2 and 1.3.

Posted: Mar 20, 2025

Hello Sciex team, as the user below, I also have issues in converting WiFF files from Sciex OS 3.4 using ProteoWizard/MSConvert. Could you please help with this issue?


Posted: Oct 29, 2024

Hello SCIEX team, could you verify if this is still true? I'm using SCIEX OS 3.4 for acquisition, but I can't get ProteoWizard/MSConvert to read my WIFF2 file. I can write mzML from the .wiff file, either using MSConvert or the MS Converter v.1.3.1; however, the charge state information doesn't seem to be captured in the mzML file. Thanks for your advice!