Creating a ProteinPilot Software Winner Proteins Results List as FASTA File

日付: 11/06/2020
カテゴリー: Academia Omics , ProteinPilot Software

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For research use only. Not for use in diagnostic procedures.


1. In ProteinPilot™ software, review the section of the Protein Summary Report that corresponds to the FDR Type Global and the FDR of 1%. In the example below, 2798 proteins are showing as the total in the ID Yield column.

2. Create a Protein Summary .txt file from the Protein Summary Results file.
3. Open the Protein Summary in Excel and keep only the 1% global FDR proteins. This protein list needs to be copied into a new sheet. 

4. The protein accession numbers in the list can be used to create a FASTA file at UniProt using this link:

5. Follow the steps in the images below to create the uncompressed FASTA file.

6. Save the list as uncompressed FASTA file.