ZenoTOF 7600システムを使用した文献

ZenoTOF 7600システムは、ASMS 2021で発売された新しいQTOFシステムです。ZenoTOF 7600システムの主な技術的進歩は、大幅に向上したMS/MS感度と新しい直交フラグメントモードであるEAD(Electron Activated Dissociation:電子励起解離)の両方を提供します。 このハイブリッドコリジョンセルは、ZenoTOF 7600 システムの技術的進歩の中核をなすものです。

これらの文献から、このテクノロジーと実現したアプリケーションの詳細をご覧ください。

Zeno trapテクノロジー

• Loboda AV, Chernushevich, IV. (2009) A novel ion trap that enables high duty cycle and wide m/z range on an orthogonal injection TOF mass spectrometer. Journal of the American Society for Mass Spectrometry, 20(7), 1342–1348.
• Chernushevich IV, Merenbloom SI, Liu S, and Nic Bloomfield N. (2017) A W-geometry ortho-TOF MS with high resolution and up to 100% duty cycle for MS/MS. Journal of the American Society for Mass Spectrometry, 28(10), 2143–2150.

EAD(Electron Activated Dissociation:電子励起解離)テクノロジー

• Baba T, Ryumin P, Duchoslav E, Chen K, Chelur A, Loyd B, Chernushevich I. (2021) Dissociation of biomolecules by an intense low-energy electron beam in a high sensitivity Time-of-Flight mass Journal of the American Society for Mass Spectrometry, 32(8), 1964-1975.
• Baba T, Campbell JL, Le Blanc J, Baker P, Hager JW, Thomson BA. (2017) Development of a Branched Radio-Frequency Ion Trap for Electron Based Dissociation and Related Applications. Mass spectrometry (Tokyo, Japan),6(1), A0058.
• Baba, T., Campbell, J. L., Le Blanc, J. C., Hager, J. W., & Thomson, B. A. (2015) Electron capture dissociation in a branched radio-frequency ion trap. Analytical chemistry, 87(1), 785–792.

プロテオーム解析

• Nupur Bhatnagar, Vincent Petit, Jayakumar Vadakekolathu, Christian Pinset, Nitin Mahajan, John Dean, Christine Spingola, Laura Arthur, David Boocock, Clare Coveney, John Muth, Jan Baughman, Melissa M Berrien-Elliott, Marc Sitbon, Matthew L. Cooper, Jan Davidson-Moncada, Todd A Fehniger, Sergio Rutella. WU-NK-101 (W-NK), a Memory-like (ML) NK Cell, Naturally Overcomes Tumor Microenvironment (TME) Metabolic Challenges, Retaining Anti-Tumor Potency. Blood (2023) 142 (Supplement 1): 4834.
• Joanna Bons, Christie L. Hunter, Rita Chupalov, Jason Causon, Alexandra Antonoplis, Jacob P. Rose, Brendan MacLean, Birgit Schilling. Localization and quantification of post-translational modifications of proteins using electron activated dissociation fragmentation on a fast-acquisition time-of-flight mass spectrometer (2023)
  
• Paulami Dey, Srujanika Rajalaxmi, Purvi Singh Thakur, Maroof Athar Hashmi, Heera Lal, Nistha Saini, Sneha Muralidharan, Raviswamy G H Math, Pushpita Saha, Swarang Sachin Pundlik, Nirpendra Singh, Arvind Ramanathan. Proteomics of hypothermic adaptation reveals that RBM3 enhances mitochondrial metabolism and muscle stem-cell differentiation (2023)
  
• Yan Wang, Jingzi Zhang, Jiafang Deng, Chengzhi Wang, Lei Fang, Yan Zhang and Jinbo Li. Targeted degradation of DNA/RNA binding proteins via covalent hydrophobic tagging (2023)
  
• Matthew E H White, Ludwig R Sinn, D Marc Jones, Joost de Folter, Simran Kaur Aulakh, Ziyue Wang, Helen R Flynn, Lynn Krüger, Pinkus Tober-Lau, Vadim Demichev, Florian Kurth, Michael Mülleder, Véronique Blanchard, Christoph B Messner, Markus Ralser. Oxonium ion scanning mass spectrometry for large-scale plasma glycoproteomics (2023)
  
• Qinqin Ji, Izabela Sokolowska, Rui Cao, Yulei Jiang, Jingjie Mo, Ping Hu (2023) A highly sensitive and robust LC-MS platform for host cell protein characterization in biotherapeutics. Biologicals, Volume 82, May 2023, 101675
  https://www.sciencedirect.com/science/article/pii/S1045105623000131
• Wang Z, Mülleder M, Batruch I, Chelur A, Textoris-Taube K, Schwecke T, Hartl J, Causon J, Castro-Perez J, Demichev V, Tate S, Ralser M. (2022) High-throughput proteomics of nanogram-scale samples with Zeno SWATH DIA. BioRxiv.
• Wang Z, Tober-Lau P, Farztdinov V, Lemke O, Schwecke T, Steinbrecher S, Muenzner J, Kriedemann H, Sander LE, Hartl J, Mulleder M, Ralser M, Kurth F. (2022) The human host response to monkeypox infection: a proteomic case series study. EMBO Mol Med 14:e16643.
• Malik AU, Karapetsas A, Nirujogi RS, Chatterjee D, Phung TK Wightman M, Gourlay R, Morrice N, Mathea S, Stefan Knapp S, Alessi DR. (2022) PKC isoforms activate LRRK1 kinase by phosphorylating conserved residues (Ser1064, Ser1074 and Thr1075) within the CORB GTPase domain. Biochem J. 479 (18): 1941–1965.
• Burton JB, Silva-Barbosa A, Bons, Rose JJ, Pfister K, Simona F, Gandhi T, Reiter K, Bernhardt O, Hunter CL, Goetzman ES, Sims-Lucas S, Schilling B. (2023) Substantial Downregulation of Mitochondrial and Peroxisomal Proteins during Acute Kidney Injury revealed by Data-Independent Acquisition Proteomics. Preprint BioRxiv.
• Wheeler AM, Orsburn BC, Bumpus NN (2023) Biotransformation of efavirenz and proteomic analysis of P450s and UGTs in mouse, macaque, and human brain-derived in vitro systems. Drug Metab Dispos. E-print.

タンパク質／ペプチド特性解析

• Andrew D. Waddell, Hina Ojha, Shalini Agarwal, Christopher J. Clarke, Ana Terriente-Felix, Houjiang Zhou, Poonam Kakade, Axel Knebel, Andrew M. Shaw, Robert Gourlay, Joby Varghese, Renata F. Soares, Rachel Toth, Thomas Macartney, Patrick A. Eyers, Nick Morrice, Richard Bayliss, Alexander J. Whitworth, Claire E. Eyers, Miratul M. K. Muqit. Regulation of Human PINK1 ubiquitin kinase by Serine167, Serine228 and Cysteine412 phosphorylation (2023)
  
• Baba T, Campbell JL. (2015) Capturing Polyradical Protein Cations after an Electron Capture Event: Evidence for their Stable Distonic Structures in the Gas Phase. Journal of the American Society for Mass Spectrometry, 26(10), 1695–1701.
• Baba T, Rajabi K, Liu S, Ryumin P, Zhang Z, Pohl K, Causon J, Le Blanc JCY, Kurogochi M. (2022) Electron Impact Excitation of Ions from Organics on Singly Protonated Peptides with and without Post-Translational Modifications. Journal of the American Society for Mass Spectrometry. 33, 9.
• Kellie JF, Schneck NA, Causon JC, Baba T, Mehl JT, Pohl KI. (2023) Top-Down Characterization and Intact Mass Quantitation of a Monoclonal Antibody Drug from Serum by Use of a Quadrupole TOF MS System Equipped with Electron-Activated Dissociation. J. Am. Soc. Mass Spectrom. 34, 1, 17–26.

糖鎖と糖ペプチドの特性解析

• Suya Liu, Pavel Ryumin, Jenny Albanese, Zoe Zhang, Takashi Baba (2023) Analysis of sialic acid linkage in n-linked glycopeptides using liquid chromatography-electron-activated dissociation time-of-flight mass spectrometry. Anal. Chem. 2023, 95, 19, 7458-7467
  https://pubs.acs.org/doi/10.1021/acs.analchem.2c04581
  
• Campbell JL, Baba T, Liu C, Lane CS, Le Blanc J, Hager JW. (2017) Analyzing Glycopeptide Isomers by Combining Differential Mobility Spectrometry with Electron- and Collision-Based Tandem Mass Spectrometry. Journal of the American Society for Mass Spectrometry, 28(7), 1374–1381.

• Baba T, Zhang Z, Liu S, Burton L, Ryumin P, Le Blanc JCY. (2022) Localization of Multiple O-Linked Glycans Exhibited in Isomeric Glycopeptides by Hot Electron Capture Dissociation. J. Proteome Res.

代謝物・低分子化合物解析

• Shufang Wang, Guannan Liu, Chong Xie, You Zhou, Runqiang Yang, Jirong Wu, Jianhong Xu, Kang Tu. (2024) Metabolomics Analysis of Different Quinoa Cultivars Based on UPLC-ZenoTOF-MS/MS and Investigation into Their Antioxidant Characteristics Plants 2024, 13(2), 240
• Kanako Tokiyoshi, Yuki Matsuzawa, Mikiko Takahashi, Hiroaki Takeda, Mayu Hasegawa, Junki Miyamoto, Hiroshi Tsugawa. Using Data-Dependent and -Independent Hybrid Acquisitions for Fast Liquid Chromatography-Based Untargeted Lipidomics. Anal Chem. 2024 Jan 11. doi: 10.1021/acs.analchem.3c04400. Online ahead of print.
• Ducati AO, Ruskic D, Sosnowski P, Baba T, Bonner R, Hopfgartner, G. (2021) Improved metabolite characterization by liquid chromatography – Tandem mass spectrometry through electron impact type fragments from adduct ions. Analytica chimica acta, 1150, 338207.
• Huang L, Drouin N, Causon J, Wegrzyn A, Castro-Perez J, Fleming R, Harms A, Hankemeier T. (2023) Reconstruction of Glutathione Metabolism in the Neuronal Model of Rotenone-Induced Neurodegeneration Using Mass Isotopologue Analysis with Hydrophilic Interaction Liquid Chromatography-Zeno High-Resolution Multiple Reaction Monitoring. Anal. Chem. 95, 6, 3255–3266.

脂質解析

• Hiroaki Takeda, Yuki Matsuzawa, Manami Takeuchi, Mikiko Takahashi, Kozo Nishida, Takeshi Harayama, Yoshimasa Todoroki, Kuniyoshi Shimizu, Nami Sakamoto, Takaki Oka, Masashi Maekawa, Mi Hwa Chung, Yuto Kurizaki, Saki Kiuchi, Kanako Tokiyoshi, Bujinlkham Buyantogtokh, Misaki Kurata, Aleš Kvasnička, Ushio Takeda, Haruki Uchino, Mayu Hasegawa, Junki Miyamoto, Kana Tanabe, Shigenori Takeda, Tetsuya Mori, Ryota Kumakubo, Tsuyoshi Tanaka, Tomoko Yoshino, Makoto Arita, Hiroshi Tsugawa. (2024) MS-DIAL 5 multimodal mass spectrometry data mining unveils lipidome complexities BioRxiv
• Cai Tie, Xinge Cui, Zhijun Zhang, Yicong Geng, Ting Liu, Xiaojuan Rong, Xin Zheng. (2024) Novel Structure-Driven Predict-to-Hit Strategy for PC Double Bond Positional Isomer Identification Based on Negative LC-MRM Analysis. Anal Chem. 96, 7, 2874-2882
• Baba T, Campbell JL, Le Blanc JCY, Baker PRS. (2018) Quantitative structural multi-class lipidomics using differential mobility- Electron Impact Excitation of Ions from Organics (EIEIO) mass spectrometry. Journal of lipid research, 59(5), 910-919.
• Baba T, Campbell JL, Le Blanc J, Baker P. (2017) Distinguishing Cis and Trans Isomers in Intact Complex Lipids Using Electron Impact Excitation of Ions from Organics Mass Spectrometry. Analytical chemistry, 89(14), 7307–7315.
• Baba T, Campbell JL, Le Blanc JC, Baker PR. (2016) Structural identification of triacylglycerol isomers using electron impact excitation of ions from organics (EIEIO). Journal of lipid research, 57(11), 2015–2027.
• Baba T, Campbell JL, Le Blanc, JC, Baker PR. (2016) In-depth sphingomyelin characterization using electron impact excitation of ions from organics and mass spectrometry. Journal of lipid research, 57(5), 858–867.
• Campbell JL, Baba T. (2015) Near-complete structural characterization of phosphatidylcholines using electron impact excitation of ions from organics. Analytical Chemistry, 2;87(11), 5837-45.

オリゴヌクレオチド/核酸

• Yixuan Xie, Francisca N. De Luna Vitorino, Ye Chen, Joanna K. Lempiäinen, Chenfeng Zhao, Robert T. Steinbock, Xingyu Liu, Zongtao Lin, Emily Zahn, Arabella L. Garcia, Matthew D. Weitzman, Benjamin A. Garcia. SWAMNA: a comprehensive platform for analysis of nucleic acid modifications (2023)
  
• Anand P, Koleto M, Kandula DR, Xiong L, MacNeill R. (2021) Novel hydrophilic-phase extraction, HILIC and high-resolution MS quantification of an RNA oligonucleotide in plasma. Bioanalysis, 14(1), epub.
• Karasawa K, Duchoslav E, Takashi Baba T. (2022) Fast Electron Detachment Dissociation of Oligonucleotides in Electron-Nitrogen Plasma Stored in Magneto Radio-Frequency Ion Traps. Anal. Chem. 94, 44, 15510–15517.